An ARGO data release is a curated data set of clinical and molecular data submitted to the ARGO Data Platform. Data releases happen approximately four times a year and are cumulative in nature. Released data can be browsed using the File Repository and downloaded using a client tool, provided that access to controlled data has been granted. To access controlled data, please see the DACO application process here.
Data Release 1.0
Release Date: June 19, 2020
ICGC ARGO is excited to announce its initial data release including whole genome sequencing (WGS) data from pancreatic cancer (PACA-CA) and esophageal cancer (OCCAMS-GB). Both programs were members of the original ICGC-25K data portal. While clinical data will soon be submitted by the programs, a selection of their molecular data has been reprocessed against the latest GRCh38 Human Reference Genome using the ARGO DNA Seq Pipeline. The resulting somatic mutation calls include single nucleotide variations (SNVs), insertion-deletion (indels), copy number variations (CNVs) and structural variations (SVs). This release includes:
- PACA-CA: 81 donors with aligned WGS reads, and 62 donors with variant calls.
- OCCAMS-GB: 96 donors with aligned WGS reads, and 95 donors with variant calls.